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BMCBI
2008
101views more  BMCBI 2008»
13 years 7 months ago
Scipio: Using protein sequences to determine the precise exon/intron structures of genes and their orthologs in closely related
Background: For many types of analyses, data about gene structure and locations of non-coding regions of genes are required. Although a vast amount of genomic sequence data is ava...
Oliver Keller, Florian Odronitz, Mario Stanke, Mar...
BICOB
2009
Springer
14 years 3 days ago
A New Machine Learning Approach for Protein Phosphorylation Site Prediction in Plants
Protein phosphorylation is a crucial regulatory mechanism in various organisms. With recent improvements in mass spectrometry, phosphorylation site data are rapidly accumulating. D...
Jianjiong Gao, Ganesh Kumar Agrawal, Jay J. Thelen...
ICMLA
2009
13 years 5 months ago
Structured Prediction with Relative Margin
In structured prediction problems, outputs are not confined to binary labels; they are often complex objects such as sequences, trees, or alignments. Support Vector Machine (SVM) ...
Pannagadatta K. Shivaswamy, Tony Jebara
BMCBI
2010
120views more  BMCBI 2010»
13 years 7 months ago
AntiBP2: improved version of antibacterial peptide prediction
Background: Antibacterial peptides are one of the effecter molecules of innate immune system. Over the last few decades several antibacterial peptides have successfully approved a...
Sneh Lata, Nitish K. Mishra, Gajendra P. S. Raghav...
BMCBI
2008
137views more  BMCBI 2008»
13 years 7 months ago
A dynamic Bayesian network approach to protein secondary structure prediction
Background: Protein secondary structure prediction method based on probabilistic models such as hidden Markov model (HMM) appeals to many because it provides meaningful informatio...
Xin-Qiu Yao, Huaiqiu Zhu, Zhen-Su She