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» Predicting memory-access cost based on data-access patterns
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ICS
2011
Tsinghua U.
12 years 11 months ago
An idiom-finding tool for increasing productivity of accelerators
Suppose one is considering purchase of a computer equipped with accelerators. Or suppose one has access to such a computer and is considering porting code to take advantage of the...
Laura Carrington, Mustafa M. Tikir, Catherine Olsc...
BMCBI
2010
125views more  BMCBI 2010»
13 years 7 months ago
Large-scale prediction of protein-protein interactions from structures
Background: The prediction of protein-protein interactions is an important step toward the elucidation of protein functions and the understanding of the molecular mechanisms insid...
Martial Hue, Michael Riffle, Jean-Philippe Vert, W...
COMPSAC
2011
IEEE
12 years 7 months ago
Dynamic Request Management Algorithms for Web-Based Services in Cloud Computing
—Providers of Web-based services can take advantage of many convenient features of cloud computing infrastructures, but they still have to implement request management algorithms...
Riccardo Lancellotti, Mauro Andreolini, Claudia Ca...
BMCBI
2005
201views more  BMCBI 2005»
13 years 7 months ago
Principal component analysis for predicting transcription-factor binding motifs from array-derived data
Background: The responses to interleukin 1 (IL-1) in human chondrocytes constitute a complex regulatory mechanism, where multiple transcription factors interact combinatorially to...
Yunlong Liu, Matthew P. Vincenti, Hiroki Yokota
CLUSTER
2003
IEEE
14 years 1 months ago
A Case Study of Parallel I/O for Biological Sequence Search on Linux Clusters
In this paper we analyze the I/O access patterns of a widely-used biological sequence search tool and implement two variations that employ parallel-I/O for data access based on PV...
Yifeng Zhu, Hong Jiang, Xiao Qin, David R. Swanson