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» Predicting relative performance of classifiers from samples
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JIB
2006
220views more  JIB 2006»
13 years 7 months ago
An assessment of machine and statistical learning approaches to inferring networks of protein-protein interactions
Protein-protein interactions (PPI) play a key role in many biological systems. Over the past few years, an explosion in availability of functional biological data obtained from hi...
Fiona Browne, Haiying Wang, Huiru Zheng, Francisco...
BMCBI
2011
13 years 2 months ago
RAIphy: Phylogenetic classification of metagenomics samples using iterative refinement of relative abundance index profiles
Background: Computational analysis of metagenomes requires the taxonomical assignment of the genome contigs assembled from DNA reads of environmental samples. Because of the diver...
Ozkan U. Nalbantoglu, Samuel F. Way, Steven H. Hin...
BMCBI
2010
109views more  BMCBI 2010»
13 years 7 months ago
Pripper: prediction of caspase cleavage sites from whole proteomes
Background: Caspases are a family of proteases that have central functions in programmed cell death (apoptosis) and inflammation. Caspases mediate their effects through aspartate-...
Mirva Piippo, Niina Lietzén, Olli Nevalaine...
ICML
2007
IEEE
14 years 8 months ago
Transductive regression piloted by inter-manifold relations
In this paper, we present a novel semisupervised regression algorithm working on multiclass data that may lie on multiple manifolds. Unlike conventional manifold regression algori...
Huan Wang, Shuicheng Yan, Thomas S. Huang, Jianzhu...
PKDD
2005
Springer
161views Data Mining» more  PKDD 2005»
14 years 1 months ago
Active Sampling for Knowledge Discovery from Biomedical Data
Abstract. We describe work aimed at cost-constrained knowledge discovery in the biomedical domain. To improve the diagnostic/prognostic models of cancer, new biomarkers are studied...
Sriharsha Veeramachaneni, Francesca Demichelis, Em...