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LION
2009
Springer
112views Optimization» more  LION 2009»
14 years 3 months ago
A Graph-Based Semi-supervised Algorithm for Protein Function Prediction from Interaction Maps
Abstract. Protein function prediction represents a fundamental challenge in bioinformatics. The increasing availability of proteomics network data has enabled the development of se...
Valerio Freschi
BMCBI
2010
86views more  BMCBI 2010»
13 years 9 months ago
Reaction graph kernels predict EC numbers of unknown enzymatic reactions in plant secondary metabolism
Background: Understanding of secondary metabolic pathway in plant is essential for finding druggable candidate enzymes. However, there are many enzymes whose functions are not yet...
Hiroto Saigo, Masahiro Hattori, Hisashi Kashima, K...
CAISE
2010
Springer
13 years 10 months ago
Beyond Process Mining: From the Past to Present and Future
Abstract. Traditionally, process mining has been used to extract models from event logs and to check or extend existing models. This has shown to be useful for improving processes ...
Wil M. P. van der Aalst, Maja Pesic, Minseok Song
BIBM
2007
IEEE
135views Bioinformatics» more  BIBM 2007»
14 years 3 months ago
Graph Kernel-Based Learning for Gene Function Prediction from Gene Interaction Network
Prediction of gene functions is a major challenge to biologists in the post-genomic era. Interactions between genes and their products compose networks and can be used to infer ge...
Xin Li, Zhu Zhang, Hsinchun Chen, Jiexun Li
ICML
2005
IEEE
14 years 9 months ago
Predicting protein folds with structural repeats using a chain graph model
Protein fold recognition is a key step towards inferring the tertiary structures from amino-acid sequences. Complex folds such as those consisting of interacting structural repeat...
Yan Liu, Eric P. Xing, Jaime G. Carbonell