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BMCBI
2006
129views more  BMCBI 2006»
13 years 8 months ago
Fast index based algorithms and software for matching position specific scoring matrices
Background: In biological sequence analysis, position specific scoring matrices (PSSMs) are widely used to represent sequence motifs in nucleotide as well as amino acid sequences....
Michael Beckstette, Robert Homann, Robert Giegeric...
FAST
2009
13 years 6 months ago
Spyglass: Fast, Scalable Metadata Search for Large-Scale Storage Systems
The scale of today's storage systems has made it increasingly difficult to find and manage files. To address this, we have developed Spyglass, a file metadata search system t...
Andrew W. Leung, Minglong Shao, Timothy Bisson, Sh...
BMCBI
2010
205views more  BMCBI 2010»
13 years 8 months ago
A fast indexing approach for protein structure comparison
Background: Protein structure comparison is a fundamental task in structural biology. While the number of known protein structures has grown rapidly over the last decade, searchin...
Lei Zhang, James Bailey, Arun Siddharth Konagurthu...
LREC
2010
157views Education» more  LREC 2010»
13 years 10 months ago
Indexing Methods for Faster and More Effective Person Name Search
This paper compares several indexing methods for person names extracted from text, developed for an information retrieval system with requirements for fast approximate matching of...
Mark Arehart
DATESO
2007
157views Database» more  DATESO 2007»
13 years 10 months ago
Index-Based Approach to Similarity Search in Protein and Nucleotide Databases
When searching databases of nucleotide or protein sequences, finding a local alignment of two sequences is one of the main tasks. Since the sizes of available databases grow const...
David Hoksza, Tomás Skopal