Background: In biological sequence analysis, position specific scoring matrices (PSSMs) are widely used to represent sequence motifs in nucleotide as well as amino acid sequences....
Michael Beckstette, Robert Homann, Robert Giegeric...
The scale of today's storage systems has made it increasingly difficult to find and manage files. To address this, we have developed Spyglass, a file metadata search system t...
Andrew W. Leung, Minglong Shao, Timothy Bisson, Sh...
Background: Protein structure comparison is a fundamental task in structural biology. While the number of known protein structures has grown rapidly over the last decade, searchin...
Lei Zhang, James Bailey, Arun Siddharth Konagurthu...
This paper compares several indexing methods for person names extracted from text, developed for an information retrieval system with requirements for fast approximate matching of...
When searching databases of nucleotide or protein sequences, finding a local alignment of two sequences is one of the main tasks. Since the sizes of available databases grow const...