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ESANN
2008
13 years 9 months ago
Computationally Efficient Neural Field Dynamics
We propose a modification of the dynamic neural field model of Amari [1], aiming at reducing the simulation effort by employing spaceand frequency representations of the dynamic st...
Alexander Gepperth, Jannik Fritsch, Christian Goer...
JCC
2008
92views more  JCC 2008»
13 years 7 months ago
Fast procedure for reconstruction of full-atom protein models from reduced representations
: We introduce PULCHRA, a fast and robust method for the reconstruction of full-atom protein models starting from a reduced protein representation. The algorithm is particularly su...
Piotr Rotkiewicz, Jeffrey Skolnick
JMLR
2010
112views more  JMLR 2010»
13 years 2 months ago
Reduced-Rank Hidden Markov Models
Hsu et al. (2009) recently proposed an efficient, accurate spectral learning algorithm for Hidden Markov Models (HMMs). In this paper we relax their assumptions and prove a tighte...
Sajid M. Siddiqi, Byron Boots, Geoffrey J. Gordon
JCC
2008
117views more  JCC 2008»
13 years 7 months ago
Prediction of protein structural class using novel evolutionary collocation-based sequence representation
: Knowledge of structural classes is useful in understanding of folding patterns in proteins. Although existing structural class prediction methods applied virtually all state-of-t...
Ke Chen 0003, Lukasz A. Kurgan, Jishou Ruan
CDC
2009
IEEE
140views Control Systems» more  CDC 2009»
14 years 7 days ago
Model reduction, optimal prediction, and the Mori-Zwanzig representation of Markov chains
— Model reduction methods from diverse fields— including control, statistical mechanics and economics—aimed at systems that can be represented by Markov chains, are discusse...
Carolyn L. Beck, Sanjay Lall, Tzuchen Liang, Matth...