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PLDI
2010
ACM
14 years 27 days ago
Bamboo: a data-centric, object-oriented approach to many-core software
Traditional data-oriented programming languages such as dataflow s and stream languages provide a natural abstraction for parallel programming. In these languages, a developer fo...
Jin Zhou, Brian Demsky
VLDB
2005
ACM
152views Database» more  VLDB 2005»
14 years 8 months ago
Composing, optimizing, and executing plans for bioinformatics web services
The emergence of a large number of bioinformatics datasets on the Internet has resulted in the need for flexible and efficient approaches to integrate information from multiple bio...
Snehal Thakkar, José Luis Ambite, Craig A. Knoblo...
BMCBI
2008
135views more  BMCBI 2008»
13 years 8 months ago
Functional site prediction selects correct protein models
Background: The prediction of protein structure can be facilitated by the use of constraints based on a knowledge of functional sites. Without this information it is still possibl...
Vijayalakshmi Chelliah, William R. Taylor
BMCBI
2008
123views more  BMCBI 2008»
13 years 8 months ago
Shape based indexing for faster search of RNA family databases
Background: Most non-coding RNA families exert their function by means of a conserved, common secondary structure. The Rfam data base contains more than five hundred structurally ...
Stefan Janssen, Jens Reeder, Robert Giegerich
ICDE
2008
IEEE
137views Database» more  ICDE 2008»
14 years 9 months ago
XML Prefiltering as a String Matching Problem
We propose a new technique for the efficient search and navigation in XML documents and streams. This technique takes string matching algorithms designed for efficient keyword sear...
Christoph Koch, Stefanie Scherzinger, Michael Schm...