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BMCBI
2006
129views more  BMCBI 2006»
13 years 8 months ago
EGenBio: A Data Management System for Evolutionary Genomics and Biodiversity
Background: Evolutionary genomics requires management and filtering of large numbers of diverse genomic sequences for accurate analysis and inference on evolutionary processes of ...
Laila A. Nahum, Matthew T. Reynolds, Zhengyuan O. ...
DILS
2005
Springer
14 years 2 months ago
PLATCOM: Current Status and Plan for the Next Stages
We have been developing a system for comparing multiple genomes, PLATCOM, where users can choose genomes of their choice freely and perform analysis of the selected genomes with a...
Kwangmin Choi, Jeong-Hyeon Choi, Amit Saple, Zhipi...
CSB
2005
IEEE
114views Bioinformatics» more  CSB 2005»
14 years 2 months ago
Tree Decomposition Based Fast Search of RNA Structures Including Pseudoknots in Genomes
Searching genomes for RNA secondary structure with computational methods has become an important approach to the annotation of non-coding RNAs. However, due to the lack of effici...
Yinglei Song, Chunmei Liu, Russell L. Malmberg, Fa...
AGENTS
2001
Springer
14 years 1 months ago
A multi-agent system for automated genomic annotation
Massive amounts of raw data are currently being generated by biologists while sequencing organisms. Outside of the largest, high-pro le projects such as the Human Genome Project, ...
Keith Decker, Xiaojing Zheng, Carl Schmidt
WABI
2009
Springer
132views Bioinformatics» more  WABI 2009»
14 years 3 months ago
mpscan: Fast Localisation of Multiple Reads in Genomes
Abstract. With Next Generation Sequencers, sequence based transcriptomic or epigenomic assays yield millions of short sequence reads that need to be mapped back on a reference geno...
Eric Rivals, Leena Salmela, Petteri Kiiskinen, Pet...