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» ProbFAST: Probabilistic Functional Analysis System Tool
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BMCBI
2010
178views more  BMCBI 2010»
13 years 7 months ago
Applications of a formal approach to decipher discrete genetic networks
Background: A growing demand for tools to assist the building and analysis of biological networks exists in systems biology. We argue that the use of a formal approach is relevant...
Fabien Corblin, Eric Fanchon, Laurent Trilling
UC
2009
Springer
14 years 2 months ago
Computing Domains of Attraction for Planar Dynamics
In this note we investigate the problem of computing the domain of attraction of a flow on R2 for a given attractor. We consider an operator that takes two inputs, the description...
Daniel S. Graça, Ning Zhong
FOCS
2004
IEEE
13 years 11 months ago
Shuffling by Semi-Random Transpositions
In the cyclic-to-random shuffle, we are given n cards arranged in a circle. At step k, we exchange the k'th card along the circle with a uniformly chosen random card. The pro...
Elchanan Mossel, Yuval Peres, Alistair Sinclair
BMCBI
2006
127views more  BMCBI 2006»
13 years 7 months ago
Using local gene expression similarities to discover regulatory binding site modules
Background: We present an approach designed to identify gene regulation patterns using sequence and expression data collected for Saccharomyces cerevisae. Our main goal is to rela...
Bartek Wilczynski, Torgeir R. Hvidsten, Andriy Kry...
WABI
2010
Springer
167views Bioinformatics» more  WABI 2010»
13 years 6 months ago
Quantifying the Strength of Natural Selection of a Motif Sequence
Quantification of selective pressures on regulatory sequences is a central question in studying the evolution of gene regulatory networks. Previous methods focus primarily on sing...
Chen-Hsiang Yeang