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    » Probabilistic structural alignment of RNA sequences
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    ISMB
    1997
    99views Computational Biology» more  ISMB 1997»
    Standardized Representations of the Literature: Combining Diverse Sources of Ribosomal Data
    13 years 8 months ago
    Standardized Representations of the Literature: Combining Diverse Sources of Ribosomal Data
    Download  www.aaai.org
    We are building a knowledge base (KB) of published structural data on the 30s ribosomal subunit in prokaryotes. Our KB is distinguished by a standardized representation of biologi...
    Russ B. Altman, Neil F. Abernethy, Richard O. Chen
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    GCCB
    2006
    130views Distributed And Parallel Com...» more  GCCB 2006»
    Accelerated microRNA-Precursor Detection Using the Smith-Waterman Algorithm on FPGAs
    13 years 11 months ago
    Accelerated microRNA-Precursor Detection Using the Smith-Waterman Algorithm on FPGAs
    Download  www.zib.de
    During the last few years more and more functionalities of RNA have been discovered that were previously thought of being carried out by proteins alone. One of the most striking di...
    Patrick May, Gunnar W. Klau, Markus Bauer, Thomas ...
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    RECOMB
    2003
    Springer
    123views Computational Biology» more  RECOMB 2003»
    A multi-expert system for the automatic detection of protein domains from sequence information
    14 years 7 months ago
    A multi-expert system for the automatic detection of protein domains from sequence information
    Download  www.cbcb.umd.edu
    We describe a novel method for detecting the domain structure of a protein from sequence information alone. The method is based on analyzing multiple sequence alignments that are ...
    Niranjan Nagarajan, Golan Yona
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    BMCBI
    2006
    91views more  BMCBI 2006»
    In silico identification of putative promoter motifs of White Spot Syndrome Virus
    13 years 7 months ago
    In silico identification of putative promoter motifs of White Spot Syndrome Virus
    Download  www.biomedcentral.com
    Background: White Spot Syndrome Virus, a member of the virus family Nimaviridae, is a large dsDNA virus infecting shrimp and other crustacean species. Although limited information...
    Hendrik Marks, Xin-Ying Ren, Hans Sandbrink, Mari&...
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    BMCBI
    2004
    208views more  BMCBI 2004»
    Using 3D Hidden Markov Models that explicitly represent spatial coordinates to model and compare protein structures
    13 years 7 months ago
    Using 3D Hidden Markov Models that explicitly represent spatial coordinates to model and compare protein structures
    Download  www.biomedcentral.com
    Background: Hidden Markov Models (HMMs) have proven very useful in computational biology for such applications as sequence pattern matching, gene-finding, and structure prediction...
    Vadim Alexandrov, Mark Gerstein
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