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BMCBI
2008
96views more  BMCBI 2008»
13 years 10 months ago
Novel methodology for construction and pruning of quasi-median networks
Background: Visualising the evolutionary history of a set of sequences is a challenge for molecular phylogenetics. One approach is to use undirected graphs, such as median network...
Sarah C. Ayling, Terence A. Brown
BMCBI
2008
162views more  BMCBI 2008»
13 years 10 months ago
Background correction using dinucleotide affinities improves the performance of GCRMA
Background: High-density short oligonucleotide microarrays are a primary research tool for assessing global gene expression. Background noise on microarrays comprises a significan...
Raad Z. Gharaibeh, Anthony Fodor, Cynthia Gibas
CORR
2010
Springer
162views Education» more  CORR 2010»
13 years 10 months ago
Random sampling of lattice paths with constraints, via transportation
We investigate Monte Carlo Markov Chain (MCMC) procedures for the random sampling of some one-dimensional lattice paths with constraints, for various constraints. We will see that...
Lucas Gerin
CORR
2010
Springer
208views Education» more  CORR 2010»
13 years 10 months ago
Bounded Model Checking of Multi-threaded Software using SMT solvers
The transition from single-core to multi-core processors has made multi-threaded software an important subject in computer aided verification. Here, we describe and evaluate an ex...
Lucas Cordeiro, Bernd Fischer 0002
BMCBI
2006
171views more  BMCBI 2006»
13 years 9 months ago
The effect of oligonucleotide microarray data pre-processing on the analysis of patient-cohort studies
Background: Intensity values measured by Affymetrix microarrays have to be both normalized, to be able to compare different microarrays by removing non-biological variation, and s...
Roel G. W. Verhaak, Frank J. T. Staal, Peter J. M....