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BMCBI
2010
151views more  BMCBI 2010»
13 years 7 months ago
Using diffusion distances for flexible molecular shape comparison
Background: Many molecules are flexible and undergo significant shape deformation as part of their function, and yet most existing molecular shape comparison (MSC) methods treat t...
Yu-Shen Liu, Qi Li, Guo-Qin Zheng, Karthik Ramani,...
NGITS
1997
Springer
13 years 11 months ago
Faster Joins, Self Joins and Multi-Way Joins Using Join Indices
We propose a new algorithm, called Stripe-join, for performing a join given a join index. Stripe-join is inspired by an algorithm called \Jive-join" developed by Li and Ross....
Hui Lei, Kenneth A. Ross
TC
2010
13 years 5 months ago
Network-on-Chip Hardware Accelerators for Biological Sequence Alignment
—The most pervasive compute operation carried out in almost all bioinformatics applications is pairwise sequence homology detection (or sequence alignment). Due to exponentially ...
Souradip Sarkar, Gaurav Ramesh Kulkarni, Partha Pr...
ATAL
2010
Springer
13 years 8 months ago
History-dependent graphical multiagent models
A dynamic model of a multiagent system defines a probability distribution over possible system behaviors over time. Alternative representations for such models present tradeoffs i...
Quang Duong, Michael P. Wellman, Satinder P. Singh...
CORR
2010
Springer
117views Education» more  CORR 2010»
13 years 7 months ago
Evolution with Drifting Targets
We consider the question of the stability of evolutionary algorithms to gradual changes, or drift, in the target concept. We define an algorithm to be resistant to drift if, for s...
Varun Kanade, Leslie G. Valiant, Jennifer Wortman ...