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BMCBI
2005
306views more  BMCBI 2005»
13 years 8 months ago
A method for aligning RNA secondary structures and its application to RNA motif detection
Background: Alignment of RNA secondary structures is important in studying functional RNA motifs. In recent years, much progress has been made in RNA motif finding and structure a...
Jianghui Liu, Jason Tsong-Li Wang, Jun Hu, Bin Tia...
BMCBI
2010
153views more  BMCBI 2010»
13 years 7 months ago
Pash 3.0: A versatile software package for read mapping and integrative analysis of genomic and epigenomic variation using massi
Background: Massively parallel sequencing readouts of epigenomic assays are enabling integrative genome-wide analyses of genomic and epigenomic variation. Pash 3.0 performs sequen...
Cristian Coarfa, Fuli Yu, Christopher A. Miller, Z...
BIBE
2007
IEEE
128views Bioinformatics» more  BIBE 2007»
14 years 2 months ago
QOMA2: Optimizing the alignment of many sequences
Abstract—We consider the problem of aligning multiple protein sequences with the goal of maximizing the SP (Sum-of-Pairs) score, when the number of sequences is large. The QOMA (...
Xu Zhang, Tamer Kahveci
WISEC
2010
ACM
14 years 3 months ago
Timing-based localization of in-band wormhole tunnels in MANETs
The problem of localizing in-band wormhole tunnels in MANETs is considered. In an in-band wormhole attack, colluding attackers use a covert tunnel to create the illusion that two ...
Jinsub Kim, Dan Sterne, Rommie Hardy, Roshan K. Th...
IWCMC
2006
ACM
14 years 2 months ago
Optimal hierarchical energy efficient design for MANETs
Due to the growing interest in mobile wireless Ad-Hoc networks’ (MANETs) applications, researchers have proposed many routing protocols that differ in their objective. Energy ef...
Wasim El-Hajj, Dionysios Kountanis, Ala I. Al-Fuqa...