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» Program Annotation in XML: A Parse-Tree Based Approach
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BMCBI
2006
108views more  BMCBI 2006»
13 years 7 months ago
Promoter prediction and annotation of microbial genomes based on DNA sequence and structural responses to superhelical stress
Background: In our previous studies, we found that the sites in prokaryotic genomes which are most susceptible to duplex destabilization under the negative superhelical stresses t...
Huiquan Wang, Craig J. Benham
BMCBI
2010
172views more  BMCBI 2010»
13 years 7 months ago
Accessing the SEED genome databases via Web services API: tools for programmers
Background: The SEED integrates many publicly available genome sequences into a single resource. The database contains accurate and up-to-date annotations based on the subsystems ...
Terry Disz, Sajia Akhter, Daniel Cuevas, Robert Ol...
DOCENG
2004
ACM
14 years 29 days ago
Supervised learning for the legacy document conversion
We consider the problem of document conversion from the renderingoriented HTML markup into a semantic-oriented XML annotation defined by user-specific DTDs or XML Schema descrip...
Boris Chidlovskii, Jérôme Fuselier
ADBIS
2004
Springer
111views Database» more  ADBIS 2004»
14 years 29 days ago
A High-Level Language for Specifying XML Data Transformations
Abstract. We propose a descriptive high-level language XDTrans devoted to specify transformations over XML data. The language is based on unranked tree automata approach. In contra...
Tadeusz Pankowski
BMCBI
2010
144views more  BMCBI 2010»
13 years 7 months ago
Identifying overrepresented concepts in gene lists from literature: a statistical approach based on Poisson mixture model
Background: Large-scale genomic studies often identify large gene lists, for example, the genes sharing the same expression patterns. The interpretation of these gene lists is gen...
Xin He, Moushumi Sen Sarma, Xu Ling, Brant W. Chee...