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» Programming Distributed Memory Sytems Using OpenMP
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IPPS
2002
IEEE
14 years 15 days ago
Implementing the NAS Benchmark MG in SAC
SAC is a purely functional array processing language designed with numerical applications in mind. It supports generic, high-level program specifications in the style of APL. How...
Clemens Grelck
IPPS
2010
IEEE
13 years 5 months ago
pFANGS: Parallel high speed sequence mapping for Next Generation 454-roche Sequencing reads
Millions of DNA sequences (reads) are generated by Next Generation Sequencing machines everyday. There is a need for high performance algorithms to map these sequences to the refer...
Sanchit Misra, Ramanathan Narayanan, Wei-keng Liao...
ISHPC
2003
Springer
14 years 23 days ago
Performance Study of a Whole Genome Comparison Tool on a Hyper-Threading Multiprocessor
We developed a multithreaded parallel implementation of a sequence alignment algorithm that is able to align whole genomes with reliable output and reasonable cost. This paper pres...
Juan del Cuvillo, Xinmin Tian, Guang R. Gao, Milin...
EUROPAR
2010
Springer
13 years 8 months ago
Estimating and Exploiting Potential Parallelism by Source-Level Dependence Profiling
Manual parallelization of programs is known to be difficult and error-prone, and there are currently few ways to measure the amount of potential parallelism in the original sequent...
Jonathan Mak, Karl-Filip Faxén, Sverker Jan...
PAAPP
2002
76views more  PAAPP 2002»
13 years 7 months ago
Performance of PDE solvers on a self-optimizing NUMA architecture
Abstract. The performance of shared-memory (OpenMP) implementations of three different PDE solver kernels representing finite difference methods, finite volume methods, and spectra...
Sverker Holmgren, Markus Nordén, Jarmo Rant...