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    RECOMB
    1997
    Springer
    155views Computational Biology» more  RECOMB 1997»
    A branch-and-cut algorithm for multiple sequence alignment
    13 years 11 months ago
    A branch-and-cut algorithm for multiple sequence alignment
    Download  www.inf.fu-berlin.de
    Multiple sequence alignment is an important problem in computational biology. We study the Maximum Trace formulation introduced by Kececioglu [?]. We first phrase the problem in ...
    Knut Reinert, Hans-Peter Lenhof, Petra Mutzel, Kur...
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    JPDC
    2007
    167views more  JPDC 2007»
    On the design of high-performance algorithms for aligning multiple protein sequences on mesh-based multiprocessor architectures
    13 years 7 months ago
    On the design of high-performance algorithms for aligning multiple protein sequences on mesh-based multiprocessor architectures
    Download  www.cc.gatech.edu
    In this paper, we address the problem of multiple sequence alignment (MSA) for handling very large number of proteins sequences on mesh-based multiprocessor architectures. As the ...
    Diana H. P. Low, Bharadwaj Veeravalli, David A. Ba...
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    BMCBI
    2008
    176views more  BMCBI 2008»
    H2r: Identification of evolutionary important residues by means of an entropy based analysis of multiple sequence alignments
    13 years 7 months ago
    H2r: Identification of evolutionary important residues by means of an entropy based analysis of multiple sequence alignments
    Download  www.biomedcentral.com
    Background: A multiple sequence alignment (MSA) generated for a protein can be used to characterise residues by means of a statistical analysis of single columns. In addition to t...
    Rainer Merkl, Matthias Zwick
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    JCB
    2002
    116views more  JCB 2002»
    A Novel Approach to Remote Homology Detection: Jumping Alignments
    13 years 7 months ago
    A Novel Approach to Remote Homology Detection: Jumping Alignments
    Download  compdiag.molgen.mpg.de
    We describe a new algorithm for protein classi cation and the detection of remote homologs. The rationale is to exploit both vertical and horizontal information of a multiple alig...
    Rainer Spang, Marc Rehmsmeier, Jens Stoye
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    BIBE
    2006
    IEEE
    119views Bioinformatics» more  BIBE 2006»
    Large Grain Size Stochastic Optimization Alignment
    14 years 1 months ago
    Large Grain Size Stochastic Optimization Alignment
    Download  csl.cs.byu.edu
    DNA sequence alignment is a critical step in identifying homology between organisms. The most widely used alignment program, ClustalW, is known to suffer from the local minima pro...
    Perry Ridge, Hyrum Carroll, Dan Sneddon, Mark J. C...
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