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» Promoter Analysis of Co-regulated Genes in the Yeast Genome
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BMCBI
2005
82views more  BMCBI 2005»
13 years 8 months ago
A novel method for prokaryotic promoter prediction based on DNA stability
Background: In the post-genomic era, correct gene prediction has become one of the biggest challenges in genome annotation. Improved promoter prediction methods can be one step to...
Aditi Kanhere, Manju Bansal
BMCBI
2006
127views more  BMCBI 2006»
13 years 8 months ago
Using local gene expression similarities to discover regulatory binding site modules
Background: We present an approach designed to identify gene regulation patterns using sequence and expression data collected for Saccharomyces cerevisae. Our main goal is to rela...
Bartek Wilczynski, Torgeir R. Hvidsten, Andriy Kry...
RECOMB
2003
Springer
14 years 8 months ago
Whole-genome comparative annotation and regulatory motif discovery in multiple yeast species
In [13] we reported the genome sequences of S. paradoxus, S. mikatae and S. bayanus and compared these three yeast species to their close relative, S. cerevisiae. Genome-wide comp...
Manolis Kamvysselis, Nick Patterson, Bruce Birren,...
BMCBI
2005
102views more  BMCBI 2005»
13 years 8 months ago
Genome-wide identification of the regulatory targets of a transcription factor using biochemical characterization and computatio
Background: A major challenge in computational genomics is the development of methodologies that allow accurate genome-wide prediction of the regulatory targets of a transcription...
Emmitt R. Jolly, Chen-Shan Chin, Ira Herskowitz, H...
NAR
2002
67views more  NAR 2002»
13 years 8 months ago
The TRIPLES database: a community resource for yeast molecular biology
TRIPLES is a web-accessible database of TRansposonInsertion Phenotypes, Localization and Expression in Saccharomyces cerevisiae--a relational database housing nearly half a millio...
Anuj Kumar, Kei-Hoi Cheung, Nick P. Tosches, Peter...