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» Promoter Prediction Using Physico-Chemical Properties of DNA
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BMCBI
2005
201views more  BMCBI 2005»
13 years 6 months ago
Principal component analysis for predicting transcription-factor binding motifs from array-derived data
Background: The responses to interleukin 1 (IL-1) in human chondrocytes constitute a complex regulatory mechanism, where multiple transcription factors interact combinatorially to...
Yunlong Liu, Matthew P. Vincenti, Hiroki Yokota
BMCBI
2007
120views more  BMCBI 2007»
13 years 6 months ago
Recognition of interferon-inducible sites, promoters, and enhancers
Background: Computational analysis of gene regulatory regions is important for prediction of functions of many uncharacterized genes. With this in mind, search of the target genes...
Elena A. Ananko, Yury V. Kondrakhin, Tatyana I. Me...
FUZZIEEE
2007
IEEE
14 years 25 days ago
Mining and Predicting CpG islands
— A DNA sequence can be described as a string composed of four symbols: A, T, C and G. Each symbol represents a chemically distinct nucleotide molecule. Combinations of two nucle...
Christopher Previti, Oscar Harari, Coral del Val
HPDC
1994
IEEE
13 years 10 months ago
Design and Implementation of Parallel Algorithms for Gene-Finding
Finding genes unequivocally in DNA sequences is one of the key goals of the Human Genome project. The human genome is a 9 billion character long DNA sequence and is estimated to c...
James Puthukattukaran, Suresh Chalasani, Periannan...
BMCBI
2006
103views more  BMCBI 2006»
13 years 6 months ago
Cis-motifs upstream of the transcription and translation initiation sites are effectively revealed by their positional disequili
Background: The discovery of cis-regulatory motifs still remains a challenging task even though the number of sequenced genomes is constantly growing. Computational analyses using...
Kenneth W. Berendzen, Kurt Stüber, Klaus Hart...