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CPM
2004
Springer
168views Combinatorics» more  CPM 2004»
14 years 3 days ago
The Protein Sequence Design Problem in Canonical Model on 2D and 3D Lattices
In this paper we investigate the protein sequence design (PSD) problem (also known as the inverse protein folding problem) under the Canonical model 4 on 2D and 3D lattices [12, 25...
Piotr Berman, Bhaskar DasGupta, Dhruv Mubayi, Robe...
LPAR
2004
Springer
14 years 2 days ago
Entanglement - A Measure for the Complexity of Directed Graphs with Applications to Logic and Games
We propose a new parameter for the complexity of finite directed graphs which measures to what extent the cycles of the graph are intertwined. This measure, called entanglement, i...
Dietmar Berwanger, Erich Grädel
AGTIVE
2003
Springer
13 years 12 months ago
Specifying Pointer Structures by Graph Reduction
Graph-reduction specifications (GRSs) are a powerful new method for specifying classes of pointer data structures (shapes). They cover important shapes, like various forms of bal...
Adam Bakewell, Detlef Plump, Colin Runciman
STOC
2010
ACM
295views Algorithms» more  STOC 2010»
13 years 11 months ago
Approximation Schemes for Steiner Forest on Planar Graphs and Graphs of Bounded Treewidth
We give the first polynomial-time approximation scheme (PTAS) for the Steiner forest problem on planar graphs and, more generally, on graphs of bounded genus. As a first step, w...
MohammadHossein Bateni, MohammadTaghi Hajiaghayi a...
SPAA
2010
ACM
13 years 11 months ago
Basic network creation games
We study a natural network creation game, in which each node locally tries to minimize its local diameter or its local average distance to other nodes, by swapping one incident ed...
Noga Alon, Erik D. Demaine, MohammadTaghi Hajiagha...