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» Protein Model Representation and Construction
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BMCBI
2010
118views more  BMCBI 2010»
13 years 7 months ago
Computing H/D-Exchange rates of single residues from data of proteolytic fragments
Background: Protein conformation and protein/protein interaction can be elucidated by solution-phase Hydrogen/ Deuterium exchange (sHDX) coupled to high-resolution mass analysis o...
Ernst Althaus, Stefan Canzar, Carsten Ehrler, Mark...
BMCBI
2011
13 years 2 months ago
A discriminative method for family-based protein remote homology detection that combines inductive logic programming and proposi
Background: Remote homology detection is a hard computational problem. Most approaches have trained computational models by using either full protein sequences or multiple sequenc...
Juliana S. Bernardes, Alessandra Carbone, Gerson Z...
CORR
2010
Springer
124views Education» more  CORR 2010»
13 years 4 months ago
Lattice model refinement of protein structures
To find the best lattice model representation of a given full atom protein structure is a hard computational problem. Several greedy methods have been suggested where results are ...
Martin Mann, Alessandro Dal Palù
BMCBI
2010
147views more  BMCBI 2010»
13 years 7 months ago
Learning biological network using mutual information and conditional independence
Background: Biological networks offer us a new way to investigate the interactions among different components and address the biological system as a whole. In this paper, a revers...
Dong-Chul Kim, Xiaoyu Wang, Chin-Rang Yang, Jean G...
AB
2007
Springer
14 years 1 months ago
Cascaded Games
We introduce a novel model construction, cascaded games, that is intended to allow us to study the notion of steady states algebraically and structurally. The model construction is...
Jittisak Senachak, Mun'delanji Vestergaard, Ren&ea...