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» Protein secondary structure prediction using neural networks
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ICML
2009
IEEE
14 years 8 months ago
Proto-predictive representation of states with simple recurrent temporal-difference networks
We propose a new neural network architecture, called Simple Recurrent Temporal-Difference Networks (SR-TDNs), that learns to predict future observations in partially observable en...
Takaki Makino
BMCBI
2010
175views more  BMCBI 2010»
13 years 8 months ago
Towards high performance computing for molecular structure prediction using IBM Cell Broadband Engine - an implementation perspe
Background: RNA structure prediction problem is a computationally complex task, especially with pseudo-knots. The problem is well-studied in existing literature and predominantly ...
S. P. T. Krishnan, Sim Sze Liang, Bharadwaj Veerav...
COMPSYSTECH
2010
13 years 4 months ago
Integration of neural networks and expert systems for time series prediction
: In this paper an approach for development of univariate time series prediction library in Java and its integration with an existing CLIPS related system is presented .A backpropa...
Ventsislav Nikolov, Valeri Bogdanov
BMCBI
2010
191views more  BMCBI 2010»
13 years 2 months ago
Molecular dynamics simulation studies and in vitro site directed mutagenesis of avian beta-defensin Apl_AvBD2
Background: Defensins comprise a group of antimicrobial peptides, widely recognized as important elements of the innate immune system in both animals and plants. Cationicity, rath...
Soja Saghar Soman, Krishnankutty Chandrika Sivakum...
BMCBI
2004
151views more  BMCBI 2004»
13 years 7 months ago
Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics
Background: The general problem of RNA secondary structure prediction under the widely used thermodynamic model is known to be NP-complete when the structures considered include a...
Jens Reeder, Robert Giegerich