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BMCBI
2008
101views more  BMCBI 2008»
13 years 8 months ago
Reranking candidate gene models with cross-species comparison for improved gene prediction
Background: Most gene finders score candidate gene models with state-based methods, typically HMMs, by combining local properties (coding potential, splice donor and acceptor patt...
Qian Liu, Koby Crammer, Fernando C. N. Pereira, Da...
BMCBI
2006
118views more  BMCBI 2006»
13 years 8 months ago
Exploration of biological network centralities with CentiBiN
Background: The elucidation of whole-cell regulatory, metabolic, interaction and other biological networks generates the need for a meaningful ranking of network elements. Central...
Björn H. Junker, Dirk Koschützki, Falk S...
WEBDB
2004
Springer
100views Database» more  WEBDB 2004»
14 years 2 months ago
Spam, Damn Spam, and Statistics: Using Statistical Analysis to Locate Spam Web Pages
The increasing importance of search engines to commercial web sites has given rise to a phenomenon we call “web spam”, that is, web pages that exist only to mislead search eng...
Dennis Fetterly, Mark Manasse, Marc Najork
BMCBI
2011
13 years 3 months ago
Logical Development of the Cell Ontology
Background: The Cell Ontology (CL) is an ontology for the representation of in vivo cell types. As biological ontologies such as the CL grow in complexity, they become increasingl...
Terrence F. Meehan, Anna Maria Masci, Amina Abdull...
BMCBI
2007
114views more  BMCBI 2007»
13 years 8 months ago
Gene models from ESTs (GeneModelEST): an application on the Solanum lycopersicum genome
Background: The structure annotation of a genome is based either on ab initio methodologies or on similaritiy searches versus molecules that have been already annotated. Ab initio...
Nunzio D'Agostino, Alessandra Traini, Luigi Frusci...