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CN
2000
75views more  CN 2000»
13 years 7 months ago
Graph structure in the Web
The study of the web as a graph is not only fascinating in its own right, but also yields valuable insight into web algorithms for crawling, searching and community discovery, and...
Andrei Z. Broder, Ravi Kumar, Farzin Maghoul, Prab...
CSB
2005
IEEE
117views Bioinformatics» more  CSB 2005»
14 years 1 months ago
Protein Structure Prediction Using Physical-Based Global Optimization and Knowledge-Guided Fragment Packing
We describe a new method to predict the tertiary structure of new-fold proteins. Our two-phase approach combines the knowledge-based fragmentpacking with the minimization of a phy...
Jinhui Ding, Elizabeth Eskow, Nelson L. Max, Silvi...
CLUSTER
2007
IEEE
14 years 1 months ago
Sequential and parallel implementation of a constraint-based algorithm for searching protein structures
— Data mining in biological structure libraries can be a powerful tool to better understand biochemical processes. This article introduces the LISA algorithm which enables the re...
Sascha Hunold, Thomas Rauber, Georg Wille
VLDB
2002
ACM
83views Database» more  VLDB 2002»
13 years 7 months ago
Searching on the Secondary Structure of Protein Sequences
In spite of the many decades of progress in database research, surprisingly scientists in the life sciences community still struggle with inefficient and awkward tools for queryin...
Laurie Hammel, Jignesh M. Patel
WABI
2009
Springer
130views Bioinformatics» more  WABI 2009»
14 years 2 months ago
Linear-Time Protein 3-D Structure Searching with Insertions and Deletions
It becomes more and more important to search for similar structures from molecular 3-D structure databases in the structural biology of the post genomic era. Two molecules are said...
Tetsuo Shibuya, Jesper Jansson, Kunihiko Sadakane