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CORR
2010
Springer
124views Education» more  CORR 2010»
13 years 4 months ago
Lattice model refinement of protein structures
To find the best lattice model representation of a given full atom protein structure is a hard computational problem. Several greedy methods have been suggested where results are ...
Martin Mann, Alessandro Dal Palù
ISMB
2003
13 years 8 months ago
PSI: indexing protein structures for fast similarity search
We consider the problem of finding similarities in protein structure databases. Our techniques extract feature vectors on triplets of SSEs (Secondary Structure Elements). Later, ...
Orhan Çamoglu, Tamer Kahveci, Ambuj K. Sing...
IPPS
2006
IEEE
14 years 1 months ago
Parallelization and performance characterization of protein 3D structure prediction of Rosetta
The prediction of protein 3D structure has become a hot research area in the post-genome era, through which people can understand a protein’s function in health and disease, exp...
Wenlong Li, Tao Wang, Eric Li, D. Baker, Li Jin, S...
FGCS
2007
106views more  FGCS 2007»
13 years 7 months ago
A parallel hybrid genetic algorithm for protein structure prediction on the computational grid
Solving the structure prediction problem for complex proteins is difficult and computationally expensive. In this paper, we propose a bicriterion parallel hybrid genetic algorith...
Alexandru-Adrian Tantar, Nouredine Melab, El-Ghaza...
CSB
2003
IEEE
116views Bioinformatics» more  CSB 2003»
14 years 23 days ago
Towards Index-based Similarity Search for Protein Structure Databases
We propose two methods for finding similarities in protein structure databases. Our techniques extract feature vectors on triplets of SSEs (Secondary Structure Elements) of prote...
Orhan Çamoglu, Tamer Kahveci, Ambuj K. Sing...