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BMCBI
2007
151views more  BMCBI 2007»
13 years 7 months ago
Identification of hot regions in protein-protein interactions by sequential pattern mining
Background: Identification of protein interacting sites is an important task in computational molecular biology. As more and more protein sequences are deposited without available...
Chen-Ming Hsu, Chien-Yu Chen, Baw-Jhiune Liu, Chih...
CSB
2004
IEEE
142views Bioinformatics» more  CSB 2004»
13 years 11 months ago
FastR: Fast Database Search Tool for Non-Coding RNA
The discovery of novel non-coding RNAs has been among the most exciting recent developments in Biology. Yet, many more remain undiscovered. It has been hypothesized that there is ...
Vineet Bafna, Shaojie Zhang
CCCG
2010
13 years 9 months ago
Fast local searches and updates in bounded universes
Given a bounded universe {0, 1, . . . , U-1}, we show how to perform (successor) searches in O(log log ) expected time and updates in O(log log ) expected amortized time, where i...
Prosenjit Bose, Karim Douïeb, Vida Dujmovic, ...
ALGORITHMICA
2004
132views more  ALGORITHMICA 2004»
13 years 7 months ago
A General Model for Authenticated Data Structures
Query answers from on-line databases can easily be corrupted by hackers or malicious database publishers. Thus it is important to provide mechanisms which allow clients to trust th...
Charles U. Martel, Glen Nuckolls, Premkumar T. Dev...
CCE
2011
13 years 2 months ago
Computational energy-based redesign of robust proteins
The robustness of a system is a property that pervades all aspects of Nature. The ability of a system to adapt itself to perturbations due to internal and external agents, to agin...
Giovanni Stracquadanio, Giuseppe Nicosia