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BIOINFORMATICS
2010
108views more  BIOINFORMATICS 2010»
13 years 5 months ago
Mass spectrometry data processing using zero-crossing lines in multi-scale of Gaussian derivative wavelet
Motivation: Peaks are the key information in Mass Spectrometry (MS) which has been increasingly used to discover diseases related proteomic patterns. Peak detection is an essentia...
Nha Nguyen, Heng Huang, Soontorn Oraintara, An P. ...
BMCBI
2011
13 years 2 months ago
MRCQuant- an accurate LC/MS relative isotopic quantification algorithm on TOF instruments
Background: Relative isotope abundance quantification, which can be used for peptide identification and differential peptide quantification, plays an important role in liquid chro...
William H. Haskins, Konstantinos Petritis, Jianqiu...
CBMS
2008
IEEE
14 years 1 months ago
ProtCV: A Tool for Extracting, Visualizing and Validating Protein Clusters Using Mass Spectra Peak-Lists
We present ProtCV (Protein Clustering and Visualization) a new software tool for grouping samples (mass spectra peak-lists) emanating from a high throughput proteomics analysis ba...
Stavroula Ventoura, Eugenia G. Giannopoulou, Elias...
BMCBI
2008
115views more  BMCBI 2008»
13 years 7 months ago
PARPST: a PARallel algorithm to find peptide sequence tags
Background: Protein identification is one of the most challenging problems in proteomics. Tandem mass spectrometry provides an important tool to handle the protein identification ...
Sara Brunetti, Elena Lodi, Elisa Mori, Maria Stell...
BMCBI
2004
159views more  BMCBI 2004»
13 years 7 months ago
Extractor for ESI quadrupole TOF tandem MS data enabled for high throughput batch processing
Background: Mass spectrometry based proteomics result in huge amounts of data that has to be processed in real time in order to efficiently feed identification algorithms and to e...
Andreas M. Boehm, Robert P. Galvin, Albert Sickman...