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RECOMB
2005
Springer
14 years 8 months ago
A Hidden Markov Model Based Scoring Function for Mass Spectrometry Database Search
An accurate scoring function for database search is crucial for peptide identification using tandem mass spectrometry. Although many mathematical models have been proposed to scor...
Yunhu Wan, Ting Chen
BIBE
2005
IEEE
126views Bioinformatics» more  BIBE 2005»
14 years 1 months ago
Suboptimal Alignments Improve the Detection of Weak Homologs in Sequence Database Searches
PSI-BLAST remains one of the popular tools for searching remote homologs in sequence databases. We recently demonstrated that hybrid alignment can function as the alignment core f...
Yuheng Li, Mario Lauria, Ralf Bundschuh
CSB
2005
IEEE
125views Bioinformatics» more  CSB 2005»
14 years 1 months ago
On Optimizing Distance-Based Similarity Search for Biological Databases
Similarity search leveraging distance-based index structures is increasingly being used for both multimedia and biological database applications. We consider distance-based indexi...
Rui Mao, Weijia Xu, Smriti R. Ramakrishnan, Glen N...
BIBE
2003
IEEE
183views Bioinformatics» more  BIBE 2003»
14 years 29 days ago
Effective Indexing and Filtering for Similarity Search in Large Biosequence Databases
We present a multi-dimensional indexing approach for fast sequence similarity search in DNA and protein databases. In particular, we propose effective transformations of subsequen...
Ozgur Ozturk, Hakan Ferhatosmanoglu
PVLDB
2010
135views more  PVLDB 2010»
13 years 6 months ago
Similarity Search and Mining in Uncertain Databases
Managing, searching and mining uncertain data has achieved much attention in the database community recently due to new sensor technologies and new ways of collecting data. There ...
Matthias Renz, Reynold Cheng, Hans-Peter Kriegel, ...