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» Pseudo Boolean Programming for Partially Ordered Genomes
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FOGA
2011
13 years 1 months ago
Approximating the distribution of fitness over hamming regions
The distribution of fitness values across a set of states sharply influences the dynamics of evolutionary processes and heuristic search in combinatorial optimization. In this p...
Andrew M. Sutton, Darrell Whitley, Adele E. Howe
TBILLC
2005
Springer
14 years 3 months ago
Natural Logic for Natural Language
We implement the extension of the logical consequence relation to a partial order ≤ on arbitary types built from e (entities) and t (Booleans) that was given in [1], and the de...
Jan van Eijck
RECOMB
2001
Springer
14 years 10 months ago
Algorithms for phylogenetic footprinting
Phylogenetic footprinting is a comparative genomics approach for predicting transcription factor binding sites, where a set of orthologous regulatory regions are compared and short...
Mathieu Blanchette
ICALP
2010
Springer
14 years 3 months ago
A Topological Approach to Recognition
We propose a new approach to the notion of recognition, which departs from the classical definitions by three specific features. First, it does not rely on automata. Secondly, it...
Mai Gehrke, Serge Grigorieff, Jean-Eric Pin