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CEC
2007
IEEE
14 years 3 months ago
Psim: a simulator for biomolecular dynamics based on P systems
Metabolic P systems, shortly MP systems, are a special class of P systems, introduced for expressing biological metabolism. Their dynamics is computed by metabolic algorithms which...
Luca Bianco, Vincenzo Manca, Luca Marchetti, Miche...
INFOCOM
2010
IEEE
13 years 9 months ago
A Balanced Consistency Maintenance Protocol for Structured P2P Systems
—A fundamental challenge of managing mutable data replication in a Peer-to-Peer (P2P) system is how to efficiently maintain consistency under various sharing patterns with heter...
Yi Hu, Min Feng, Laxmi N. Bhuyan
GRID
2007
Springer
14 years 5 months ago
Integrating multi-level molecular simulations across heterogeneous resources
— Biomolecular simulations play a key role in the study of complex biological processes at microscopic levels in which macromolecules such as proteins are involved. The simulatio...
Yudong Sun, Steve McKeever, Kia Balali-Mood, Mark ...
CEC
2005
IEEE
14 years 4 months ago
A genetic algorithm for energy minimization in bio-molecular systems
Energy minimization algorithms for bio-molecular systems are critical to applications such as the prediction of protein folding. Conventional energy minimization methods such as th...
Xiaochun Weng, Lutz Hamel, Lenore M. Martin, Joan ...
ISCA
2007
IEEE
196views Hardware» more  ISCA 2007»
14 years 5 months ago
Anton, a special-purpose machine for molecular dynamics simulation
The ability to perform long, accurate molecular dynamics (MD) simulations involving proteins and other biological macromolecules could in principle provide answers to some of the ...
David E. Shaw, Martin M. Deneroff, Ron O. Dror, Je...