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TACAS
2007
Springer
144views Algorithms» more  TACAS 2007»
14 years 1 months ago
Detecting Races in Ensembles of Message Sequence Charts
Abstract. The analysis of message sequence charts (MSCs) is highly important in preventing common problems in communication protocols. Detecting race conditions, i.e., possible dis...
Edith Elkind, Blaise Genest, Doron Peled
RECOMB
2010
Springer
13 years 5 months ago
Listing All Parsimonious Reversal Sequences: New Algorithms and Perspectives
In comparative genomics studies, finding a minimum length sequences of reversals, so called sorting by reversals, has been the topic of a huge literature. Since there are many mini...
Ghada Badr, Krister M. Swenson, David Sankoff
BMCBI
2006
112views more  BMCBI 2006»
13 years 7 months ago
A correlated motif approach for finding short linear motifs from protein interaction networks
Background: An important class of interaction switches for biological circuits and disease pathways are short binding motifs. However, the biological experiments to find these bin...
Soon-Heng Tan, Hugo Willy, Wing-Kin Sung, See-Kion...
TON
2008
125views more  TON 2008»
13 years 7 months ago
Two techniques for fast computation of constrained shortest paths
Abstract-- Computing constrained shortest paths is fundamental to some important network functions such as QoS routing, which is to find the cheapest path that satisfies certain co...
Shigang Chen, Meongchul Song, Sartaj Sahni
BMCBI
2004
196views more  BMCBI 2004»
13 years 7 months ago
MUSCLE: a multiple sequence alignment method with reduced time and space complexity
Background: In a previous paper, we introduced MUSCLE, a new program for creating multiple alignments of protein sequences, giving a brief summary of the algorithm and showing MUS...
Robert C. Edgar