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» Quality-Based Similarity Search for Biological Sequence Data...
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2005
ACM
14 years 1 months ago
ClawHMMER: A Streaming HMMer-Search Implementation
The proliferation of biological sequence data has motivated the need for an extremely fast probabilistic sequence search. One method for performing this search involves evaluating...
Daniel Reiter Horn, Mike Houston, Pat Hanrahan
PODS
2005
ACM
127views Database» more  PODS 2005»
14 years 8 months ago
FTW: fast similarity search under the time warping distance
Time-series data naturally arise in countless domains, such as meteorology, astrophysics, geology, multimedia, and economics. Similarity search is very popular, and DTW (Dynamic T...
Yasushi Sakurai, Masatoshi Yoshikawa, Christos Fal...
VLDB
2002
ACM
184views Database» more  VLDB 2002»
14 years 8 months ago
Database indexing for large DNA and protein sequence collections
Our aim is to develop new database technologies for the approximate matching of unstructured string data using indexes. We explore the potential of the suffix tree data structure i...
Ela Hunt, Malcolm P. Atkinson, Robert W. Irving
ADC
2005
Springer
122views Database» more  ADC 2005»
14 years 1 months ago
Finding Similarity in Time Series Data by Method of Time Weighted Moments
Similarity search in time series data is an active area of research in data mining. In this paper we introduce a new approach for performing similarity search over time series dat...
Durga Toshniwal, Ramesh C. Joshi
BMCBI
2010
219views more  BMCBI 2010»
13 years 2 months ago
BiologicalNetworks 2.0 - an integrative view of genome biology data
Background: A significant problem in the study of mechanisms of an organism's development is the elucidation of interrelated factors which are making an impact on the differe...
Sergey Kozhenkov, Yulia Dubinina, Mayya Sedova, Am...