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COCOON
2007
Springer
14 years 2 months ago
Seed-Based Exclusion Method for Non-coding RNA Gene Search
Given an RNA family characterized by conserved sequences and folding constraints, the problem is to search for all the instances of the RNA family in a genomic database. As seed-ba...
Jean-Eudes Duchesne, Mathieu Giraud, Nadia El-Mabr...
BIBE
2010
IEEE
143views Bioinformatics» more  BIBE 2010»
13 years 9 months ago
The Effect of Sequence Error and Partial Training Data on BLAST Accuracy
- Metagenomics is the study of environmental samples. Because few tools exist for metagenomic analysis, a natural step has been to utilize the popular homology tool, BLAST, to sear...
Steven D. Essinger, Gail L. Rosen
ISMB
1994
13 years 9 months ago
An Improved System for Exon Recognition and Gene Modeling in Human DNA Sequence
A new version of the GRAIL system (Uberbacher and Mural, 1991; Mural et al., 1992; Uberbacher et al., 1993), called GRAILII, has recently been developed (Xu et al., 1994). GRAILII...
Yin Xu, J. Ralph Einstein, Richard J. Mural, Manes...
BMCBI
2008
115views more  BMCBI 2008»
13 years 8 months ago
PARPST: a PARallel algorithm to find peptide sequence tags
Background: Protein identification is one of the most challenging problems in proteomics. Tandem mass spectrometry provides an important tool to handle the protein identification ...
Sara Brunetti, Elena Lodi, Elisa Mori, Maria Stell...
DASFAA
2006
IEEE
153views Database» more  DASFAA 2006»
14 years 1 months ago
DAPSS: Exact Subsequence Matching for Data Streams
There is much interest in the processing of data streams for applications in the fields such as financial analysis, network monitoring, mobile services, and sensor network manage...
Yasuhiro Fujiwara, Yasushi Sakurai, Masashi Yamamu...