Modeling in systems biology is concerned with using experimental information and mathematical methods to build quantitative models at different biological scales. This requires int...
Zhouyang Sun, Anthony Finkelstein, Jonathan Ashmor...
Background: The PathOlogist is a new tool designed to transform large sets of gene expression data into quantitative descriptors of pathway-level behavior. The tool aims to provid...
Sharon I. Greenblum, Sol Efroni, Carl F. Schaefer,...
The extended answer set semantics for simple logic programs, i.e. programs with only classical negation, allows for the defeat of rules to resolve contradictions. In addition, a pa...
Davy Van Nieuwenborgh, Stijn Heymans, Dirk Vermeir
Multi-level spatial aggregates are important for data mining in a variety of scientific and engineering applications, from analysis of weather data (aggregating temperature and p...
Clustering methods are a useful and common first step in gene expression studies, but the results may be hard to interpret. We bring in explicitly an indicator of which genes tie ...