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» Quantitative Association Analysis Using Tree Hierarchies
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WISE
2007
Springer
14 years 1 months ago
Using Ontology with Semantic Web Services to Support Modeling in Systems Biology
Modeling in systems biology is concerned with using experimental information and mathematical methods to build quantitative models at different biological scales. This requires int...
Zhouyang Sun, Anthony Finkelstein, Jonathan Ashmor...
BMCBI
2011
13 years 1 months ago
The PathOlogist: An Automated Tool for Pathway-Centric Analysis
Background: The PathOlogist is a new tool designed to transform large sets of gene expression data into quantitative descriptors of pathway-level behavior. The tool aims to provid...
Sharon I. Greenblum, Sol Efroni, Carl F. Schaefer,...
LPAR
2004
Springer
14 years 22 days ago
Weighted Answer Sets and Applications in Intelligence Analysis
The extended answer set semantics for simple logic programs, i.e. programs with only classical negation, allows for the defeat of rules to resolve contradictions. In addition, a pa...
Davy Van Nieuwenborgh, Stijn Heymans, Dirk Vermeir
IJCAI
2003
13 years 8 months ago
Gaussian Process Models of Spatial Aggregation Algorithms
Multi-level spatial aggregates are important for data mining in a variety of scientific and engineering applications, from analysis of weather data (aggregating temperature and p...
Naren Ramakrishnan, Christopher Bailey-Kellogg
RECOMB
2010
Springer
14 years 1 months ago
Hierarchical Generative Biclustering for MicroRNA Expression Analysis
Clustering methods are a useful and common first step in gene expression studies, but the results may be hard to interpret. We bring in explicitly an indicator of which genes tie ...
José Caldas, Samuel Kaski