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RECOMB
2008
Springer
14 years 10 months ago
BayCis: A Bayesian Hierarchical HMM for Cis-Regulatory Module Decoding in Metazoan Genomes
The transcriptional regulatory sequences in metazoan genomes often consist of multiple cis-regulatory modules (CRMs). Each CRM contains locally enriched occurrences of binding site...
Tien-ho Lin, Pradipta Ray, Geir Kjetil Sandve, Sel...
ICALP
2009
Springer
14 years 10 months ago
Elimination Graphs
A graph is chordal if it does not contain any induced cycle of size greater than three. An alternative characterization of chordal graphs is via a perfect elimination ordering, whi...
Yuli Ye, Allan Borodin
ICALP
2009
Springer
14 years 10 months ago
Sorting and Selection with Imprecise Comparisons
Abstract. In experimental psychology, the method of paired comparisons was proposed as a means for ranking preferences amongst n elements of a human subject. The method requires pe...
Avinatan Hassidim, Jelani Nelson, Miklós Aj...
ICALP
2009
Springer
14 years 10 months ago
Correlation Clustering Revisited: The "True" Cost of Error Minimization Problems
Correlation Clustering was defined by Bansal, Blum, and Chawla as the problem of clustering a set of elements based on a possibly inconsistent binary similarity function between e...
Nir Ailon, Edo Liberty
ICALP
2009
Springer
14 years 10 months ago
Algorithms for Secretary Problems on Graphs and Hypergraphs
We examine several online matching problems, with applications to Internet advertising reservation systems. Consider an edge-weighted bipartite graph G, with partite sets L, R. We...
Martin Pál, Nitish Korula
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