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BMCBI
2006
116views more  BMCBI 2006»
13 years 10 months ago
MICA: desktop software for comprehensive searching of DNA databases
Background: Molecular biologists work with DNA databases that often include entire genomes. A common requirement is to search a DNA database to find exact matches for a nondegener...
William A. Stokes, Benjamin S. Glick
IPPS
2000
IEEE
14 years 1 months ago
Bandwidth-Efficient Collective Communication for Clustered Wide Area Systems
Metacomputing infrastructures couple multiple clusters (or MPPs) via wide-area networks. A major problem in programming parallel applications for such platforms is their hierarchi...
Thilo Kielmann, Henri E. Bal, Sergei Gorlatch
TKDE
2002
140views more  TKDE 2002»
13 years 9 months ago
Transaction Processing in Mobile, Heterogeneous Database Systems
As technological advances are made in software and hardware, the feasibility of accessing information "any time, anywhere" is becoming a reality. Furthermore, the diversi...
James B. Lim, Ali R. Hurson
ICDE
2010
IEEE
249views Database» more  ICDE 2010»
14 years 5 months ago
PARINET: A tunable access method for in-network trajectories
— In this paper we propose PARINET, a new access method to efficiently retrieve the trajectories of objects moving in networks. The structure of PARINET is based on a combination...
Iulian Sandu Popa, Karine Zeitouni, Vincent Oria, ...
BMCBI
2011
13 years 1 months ago
Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation
Background: The Smith-Waterman algorithm for local sequence alignment is more sensitive than heuristic methods for database searching, but also more time-consuming. The fastest ap...
Torbjørn Rognes