Background: During the past decade, many software packages have been developed for analysis and visualization of various types of microarrays. We have developed and maintained the...
Although it is increasingly difficult for large scientific programs to attain a significant fraction of peak performance on systems based on microprocessors with substantial instr...
John M. Mellor-Crummey, Robert J. Fowler, Gabriel ...
Background: Chromatin immunoprecipitation combined with DNA microarrays (ChIP-chip) is an assay used for investigating DNA-protein-binding or post-translational chromatin/histone ...
1 Multi-paradigm, multi-threaded and multi-core computing devices available today provide several orders of magnitude performance improvement over mainstream microprocessors. These...
Jeremy S. Meredith, Sadaf R. Alam, Jeffrey S. Vett...
Cray X1 Fortran and C/C++ compilers provide a number of loop transformations, notably vectorization and multistreaming, in order to exploit the multistreaming processor (MSP) hard...