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BMCBI
2008
148views more  BMCBI 2008»
13 years 8 months ago
Automating dChip: toward reproducible sharing of microarray data analysis
Background: During the past decade, many software packages have been developed for analysis and visualization of various types of microarrays. We have developed and maintained the...
Cheng Li
TJS
2002
135views more  TJS 2002»
13 years 7 months ago
HPCVIEW: A Tool for Top-down Analysis of Node Performance
Although it is increasingly difficult for large scientific programs to attain a significant fraction of peak performance on systems based on microprocessors with substantial instr...
John M. Mellor-Crummey, Robert J. Fowler, Gabriel ...
BMCBI
2010
153views more  BMCBI 2010»
13 years 8 months ago
Starr: Simple Tiling ARRay analysis of Affymetrix ChIP-chip data
Background: Chromatin immunoprecipitation combined with DNA microarrays (ChIP-chip) is an assay used for investigating DNA-protein-binding or post-translational chromatin/histone ...
Benedikt Zacher, Pei Fen Kuan, Achim Tresch
IPPS
2007
IEEE
14 years 2 months ago
Analysis of a Computational Biology Simulation Technique on Emerging Processing Architectures
1 Multi-paradigm, multi-threaded and multi-core computing devices available today provide several orders of magnitude performance improvement over mainstream microprocessors. These...
Jeremy S. Meredith, Sadaf R. Alam, Jeffrey S. Vett...
ICCS
2005
Springer
14 years 1 months ago
Performance and Scalability Analysis of Cray X1 Vectorization and Multistreaming Optimization
Cray X1 Fortran and C/C++ compilers provide a number of loop transformations, notably vectorization and multistreaming, in order to exploit the multistreaming processor (MSP) hard...
Sadaf R. Alam, Jeffrey S. Vetter