134 search results - page 5 / 27 » RNA Secondary Structure Prediction with Simple Pseudoknots |
TCBB
2010
13 years 5 months ago
2010
— We present efficient cache-oblivious algorithms for some well-studied string problems in bioinformatics including the longest common subsequence, global pairwise sequence alig...
IPPS
2008
IEEE
14 years 1 months ago
2008
IEEE
Despite the computing power of emerging technologies, predicting long RNA secondary structures with thermodynamics-based methods is still infeasible, especially if the structures ...
BMCBI
2004
13 years 7 months ago
2004
Background: The proliferation of structural and functional studies of RNA has revealed an increasing range of RNA's structural repertoire. Toward the objective of systematic ...
BIOCOMP
2006
13 years 8 months ago
2006
- In this study, a context-sensitive grammar is suggested to model various forms of RNA secondary structures, especially pseudoknots. Comparing with a conventional context-free gra...
WABI
2007
Springer
14 years 1 months ago
2007
Springer
Predicting the secondary structure of an RNA sequence is an important problem in structural bioinformatics. The general RNA folding problem, where the sequence to be folded may con...