The problem of clustering continuous valued data has been well studied in literature. Its application to microarray analysis relies on such algorithms as -means, dimensionality re...
We developed a dynamic programming approach of computing common sequence structure patterns among two RNAs given their primary sequences and their secondary structures. Common pat...
Background: The impressive increase of novel RNA structures, during the past few years, demands automated methods for structure comparison. While many algorithms handle only small...
Svetlana Kirillova, Silvio C. E. Tosatto, Oliviero...
We present a consensus algorithm that combines unreliable failure detection and randomization, two well-known techniques for solving consensus in asynchronous systems with crash f...
Background: Current approaches for identifying transcriptional regulatory elements are mainly via the combination of two properties, the evolutionary conservation and the overrepr...
Changqing Zhang, Jin Wang, Xu Hua, Jinggui Fang, H...