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» Randomized Algorithms for Motif Detection
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OOPSLA
2010
Springer
13 years 7 months ago
Scalable and systematic detection of buggy inconsistencies in source code
Software developers often duplicate source code to replicate functionality. This practice can hinder the maintenance of a software project: bugs may arise when two identical code ...
Mark Gabel, Junfeng Yang, Yuan Yu, Moisés G...
ALT
2007
Springer
14 years 5 months ago
Learning and Verifying Graphs Using Queries with a Focus on Edge Counting
We consider the problem of learning and verifying hidden graphs and their properties given query access to the graphs. We analyze various queries (edge detection, edge counting, sh...
Lev Reyzin, Nikhil Srivastava
BMCBI
2008
123views more  BMCBI 2008»
13 years 8 months ago
PocketMatch: A new algorithm to compare binding sites in protein structures
Background: Recognizing similarities and deriving relationships among protein molecules is a fundamental requirement in present-day biology. Similarities can be present at various...
Kalidas Yeturu, Nagasuma Chandra
BMCBI
2010
139views more  BMCBI 2010»
13 years 8 months ago
A global optimization algorithm for protein surface alignment
Background: A relevant problem in drug design is the comparison and recognition of protein binding sites. Binding sites recognition is generally based on geometry often combined w...
Paola Bertolazzi, Concettina Guerra, Giampaolo Liu...
ISSTA
2012
ACM
11 years 11 months ago
Swarm testing
Swarm testing is a novel and inexpensive way to improve the diversity of test cases generated during random testing. Increased diversity leads to improved coverage and fault detec...
Alex Groce, Chaoqiang Zhang, Eric Eide, Yang Chen,...