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» Randomized Algorithms for Motif Detection
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BMCBI
2005
92views more  BMCBI 2005»
13 years 8 months ago
Predicting functional sites with an automated algorithm suitable for heterogeneous datasets
Background: In a previous report (La et al., Proteins, 2005), we have demonstrated that the identification of phylogenetic motifs, protein sequence fragments conserving the overal...
David La, Dennis R. Livesay
BIRD
2008
Springer
162views Bioinformatics» more  BIRD 2008»
13 years 10 months ago
Suffix Tree Characterization of Maximal Motifs in Biological Sequences
Finding motifs in biological sequences is one of the most intriguing problems for string algorithms designers due to, on the one hand, the numerous applications of this problem in...
Maria Federico, Nadia Pisanti
BIBM
2008
IEEE
113views Bioinformatics» more  BIBM 2008»
14 years 3 months ago
Towards Site-Based Protein Functional Annotations
Abstract—The exact relationship between protein active centers and protein functions is unclear even after decades of intensive study. To improve the functional prediction abilit...
Seak Fei Lei, Jun Huan
IMSCCS
2006
IEEE
14 years 2 months ago
Combining Comparative Genomics with de novo Motif Discovery to Identify Human Transcription Factor DNA-Binding Motifs
Background: As more and more genomes are sequenced, comparative genomics approaches provide a methodology for identifying conserved regulatory elements that may be involved in gen...
Linyong Mao, W. Jim Zheng
CVPR
2000
IEEE
14 years 10 months ago
A Computational Model for Repeated Pattern Perception Using Frieze and Wallpaper Groups
Humans have an innate ability to perceive symmetry, but it is not obvious how to automate this powerful insight. In this paper the mathematical theory of Frieze and wallpaper grou...
Yanxi Liu, Robert T. Collins