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BMCBI
2010
106views more  BMCBI 2010»
15 years 4 months ago
Selection of optimal reference genes for normalization in quantitative RT-PCR
Background: Normalization in real-time qRT-PCR is necessary to compensate for experimental variation. A popular normalization strategy employs reference gene(s), which may introdu...
Inna Chervoneva, Yanyan Li, Stephanie Schulz, Sean...
BMCBI
2006
118views more  BMCBI 2006»
15 years 4 months ago
Exploration of biological network centralities with CentiBiN
Background: The elucidation of whole-cell regulatory, metabolic, interaction and other biological networks generates the need for a meaningful ranking of network elements. Central...
Björn H. Junker, Dirk Koschützki, Falk S...
KDD
2012
ACM
212views Data Mining» more  KDD 2012»
13 years 7 months ago
Fast bregman divergence NMF using taylor expansion and coordinate descent
Non-negative matrix factorization (NMF) provides a lower rank approximation of a matrix. Due to nonnegativity imposed on the factors, it gives a latent structure that is often mor...
Liangda Li, Guy Lebanon, Haesun Park
SIGIR
2012
ACM
13 years 7 months ago
TFMAP: optimizing MAP for top-n context-aware recommendation
In this paper, we tackle the problem of top-N context-aware recommendation for implicit feedback scenarios. We frame this challenge as a ranking problem in collaborative filterin...
Yue Shi, Alexandros Karatzoglou, Linas Baltrunas, ...
BMCBI
2005
212views more  BMCBI 2005»
15 years 4 months ago
PAGE: Parametric Analysis of Gene Set Enrichment
Background: Gene set enrichment analysis (GSEA) is a microarray data analysis method that uses predefined gene sets and ranks of genes to identify significant biological changes i...
Seon-Young Kim, David J. Volsky