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» Reaction Motifs in Metabolic Networks
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ICALP
2007
Springer
14 years 4 months ago
Sharp Tractability Borderlines for Finding Connected Motifs in Vertex-Colored Graphs
We study the problem of finding occurrences of motifs in vertex-colored graphs, where a motif is a multiset of colors, and an occurrence of a motif is a subset of connected vertic...
Michael R. Fellows, Guillaume Fertin, Danny Hermel...
GG
2004
Springer
14 years 3 months ago
Analysis of Metabolic Pathways by Graph Transformation
Biochemical pathways, such as metabolic, regulatory, and signal transduction pathways, constitute complex networks of functional and physical interactions between molecular species...
Francesc Rosselló, Gabriel Valiente
BIRD
2008
Springer
158views Bioinformatics» more  BIRD 2008»
13 years 11 months ago
A Computational Method for Reconstructing Gapless Metabolic Networks
Abstract. We propose a computational method for reconstructing metabolic networks. The method utilizes optimization techniques and graph traversal algorithms to discover a set of b...
Esa Pitkänen, Ari Rantanen, Juho Rousu, Esko ...
COMPLIFE
2006
Springer
14 years 1 months ago
A New Approach to Flux Coupling Analysis of Metabolic Networks
Flux coupling analysis is a method to identify blocked and coupled reactions in a metabolic network at steady state. We present a new approach to flux coupling analysis, which uses...
Abdelhalim Larhlimi, Alexander Bockmayr
CMSB
2003
Springer
14 years 3 months ago
A Method for Estimating Metabolic Fluxes from Incomplete Isotopomer Information
Metabolic flux estimation—the problem of finding out the rates of reactions in metabolic pathways—is an important problem area in the study of metabolism. The most accurate t...
Juho Rousu, Ari Rantanen, Hannu Maaheimo, Esa Pitk...