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BMCBI
2010
121views more  BMCBI 2010»
13 years 7 months ago
MS4 - Multi-Scale Selector of Sequence Signatures: An alignment-free method for classification of biological sequences
Background: While multiple alignment is the first step of usual classification schemes for biological sequences, alignment-free methods are being increasingly used as alternatives...
Eduardo Corel, Florian Pitschi, Ivan Laprevotte, G...
AI
2006
Springer
13 years 7 months ago
Cut-and-solve: An iterative search strategy for combinatorial optimization problems
Branch-and-bound and branch-and-cut use search trees to identify optimal solutions to combinatorial optimization problems. In this paper, we introduce an iterative search strategy...
Sharlee Climer, Weixiong Zhang
ENTCS
2008
142views more  ENTCS 2008»
13 years 7 months ago
An Open System Operational Semantics for an Object-Oriented and Component-Based Language
Object orientation and component-based development have both proven useful for the elaboration of open distributed systems. These paradigms are offered by the Creol language. Creo...
Jasmin Christian Blanchette, Olaf Owe
JMLR
2006
108views more  JMLR 2006»
13 years 7 months ago
The Interplay of Optimization and Machine Learning Research
The fields of machine learning and mathematical programming are increasingly intertwined. Optimization problems lie at the heart of most machine learning approaches. The Special T...
Kristin P. Bennett, Emilio Parrado-Hernánde...
BMCBI
2004
151views more  BMCBI 2004»
13 years 7 months ago
Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics
Background: The general problem of RNA secondary structure prediction under the widely used thermodynamic model is known to be NP-complete when the structures considered include a...
Jens Reeder, Robert Giegerich