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BMCBI
2010
121views more  BMCBI 2010»
13 years 7 months ago
A grammar-based distance metric enables fast and accurate clustering of large sets of 16S sequences
Background: We propose a sequence clustering algorithm and compare the partition quality and execution time of the proposed algorithm with those of a popular existing algorithm. T...
David J. Russell, Samuel F. Way, Andrew K. Benson,...
CIBCB
2006
IEEE
14 years 1 months ago
Efficient Probe Selection in Microarray Design
Abstract-- The DNA microarray technology, originally developed to measure the level of gene expression, had become one of the most widely used tools in genomic study. Microarrays h...
Leszek Gasieniec, Cindy Y. Li, Paul Sant, Prudence...
ICIP
2006
IEEE
14 years 11 months ago
Spatial Pooling Strategies for Perceptual Image Quality Assessment
Many recently proposed perceptual image quality assessment algorithms are implemented in two stages. In the first stage, image quality is evaluated within local regions. This resu...
Zhou Wang, Xinli Shang
FM
2009
Springer
110views Formal Methods» more  FM 2009»
14 years 4 months ago
Reduced Execution Semantics of MPI: From Theory to Practice
Abstract: There is growing need to develop formal verification tools for Message Passing Interface (MPI) programs, to eliminate bugs such as deadlocks and local assertion violatio...
Sarvani S. Vakkalanka, Anh Vo, Ganesh Gopalakrishn...
SBACPAD
2008
IEEE
132views Hardware» more  SBACPAD 2008»
14 years 4 months ago
Aspect-Based Patterns for Grid Programming
The development of grid algorithms is frequently hampered by limited means to describe topologies and lack of support for the invasive composition of legacy components in order to...
Luis Daniel Benavides Navarro, Rémi Douence...