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    BMCBI
    2006
    111views more  BMCBI 2006»
    PepDist: A New Framework for Protein-Peptide Binding Prediction based on Learning Peptide Distance Functions
    13 years 9 months ago
    PepDist: A New Framework for Protein-Peptide Binding Prediction based on Learning Peptide Distance Functions
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    Background: Many different aspects of cellular signalling, trafficking and targeting mechanisms are mediated by interactions between proteins and peptides. Representative examples...
    Tomer Hertz, Chen Yanover
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    BMCBI
    2006
    137views more  BMCBI 2006»
    A classification-based framework for predicting and analyzing gene regulatory response
    13 years 9 months ago
    A classification-based framework for predicting and analyzing gene regulatory response
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    Background: We have recently introduced a predictive framework for studying gene transcriptional regulation in simpler organisms using a novel supervised learning algorithm called...
    Anshul Kundaje, Manuel Middendorf, Mihir Shah, Chr...
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    BMCBI
    2006
    158views more  BMCBI 2006»
    Parallelization of multicategory support vector machines (PMC-SVM) for classifying microarray data
    13 years 9 months ago
    Parallelization of multicategory support vector machines (PMC-SVM) for classifying microarray data
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    Background: Multicategory Support Vector Machines (MC-SVM) are powerful classification systems with excellent performance in a variety of data classification problems. Since the p...
    Chaoyang Zhang, Peng Li, Arun Rajendran, Youping D...
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    BMCBI
    2006
    157views more  BMCBI 2006»
    Determination of the minimum number of microarray experiments for discovery of gene expression patterns
    13 years 9 months ago
    Determination of the minimum number of microarray experiments for discovery of gene expression patterns
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    Background: One type of DNA microarray experiment is discovery of gene expression patterns for a cell line undergoing a biological process over a series of time points. Two import...
    Fang-Xiang Wu, W. J. Zhang, Anthony J. Kusalik
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    BMCBI
    2006
    130views more  BMCBI 2006»
    MicroTar: predicting microRNA targets from RNA duplexes
    13 years 9 months ago
    MicroTar: predicting microRNA targets from RNA duplexes
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    Background: The accurate prediction of a comprehensive set of messenger RNAs (targets) regulated by animal microRNAs (miRNAs) remains an open problem. In particular, the predictio...
    Rahul Thadani, Martti T. Tammi
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