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CGO
2009
IEEE
14 years 2 months ago
Automatic Feature Generation for Machine Learning Based Optimizing Compilation
Recent work has shown that machine learning can automate and in some cases outperform hand crafted compiler optimizations. Central to such an approach is that machine learning tec...
Hugh Leather, Edwin V. Bonilla, Michael O'Boyle
SCANGIS
2003
13 years 9 months ago
Parallel Distributed Application Framework for Earth Science Data Processing
The management and the processing of Earth science data has been gaining importance over the last decade due to higher data volumes generated by a larger number of instruments and ...
Petr Votava, Rama Nemani, Keith Golden, Daniel E. ...
HPDC
2010
IEEE
13 years 8 months ago
Exploring the RNA folding energy landscape using scalable distributed cyberinfrastructure
The increasing significance of RNAs in transcriptional or post-transcriptional gene regulation processes has generated considerable interest towards the prediction of RNA folding ...
Joohyun Kim, Wei Huang, Sharath Maddineni, Fareed ...
BMCBI
2011
12 years 11 months ago
A user-friendly web portal for T-Coffee on supercomputers
Background: Parallel T-Coffee (PTC) was the first parallel implementation of the T-Coffee multiple sequence alignment tool. It is based on MPI and RMA mechanisms. Its purpose is t...
Josep Rius Torrento, Fernando Cores, Francesc Sols...
BMCBI
2010
189views more  BMCBI 2010»
13 years 7 months ago
Efficient parallel and out of core algorithms for constructing large bi-directed de Bruijn graphs
Background: Assembling genomic sequences from a set of overlapping reads is one of the most fundamental problems in computational biology. Algorithms addressing the assembly probl...
Vamsi Kundeti, Sanguthevar Rajasekaran, Hieu Dinh,...