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» Recognizing DNA Splicing
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JUCS
2006
68views more  JUCS 2006»
13 years 7 months ago
Time-varying H Systems Revisited
: We cast a new look on time-varying distributed H systems. In their original definition, where only new strings are passed to the next component, this language definition in itsel...
Remco Loos
BMCBI
2008
143views more  BMCBI 2008»
13 years 7 months ago
Automatic detection of exonic splicing enhancers (ESEs) using SVMs
Background: Exonic splicing enhancers (ESEs) activate nearby splice sites and promote the inclusion (vs. exclusion) of exons in which they reside, while being a binding site for S...
Britta Mersch, Alexander Gepperth, Sándor S...
NC
2010
137views Neural Networks» more  NC 2010»
13 years 2 months ago
On the regularity of circular splicing languages: a survey and new developments
Circular splicing has been introduced to model a specific recombinant behaviour of circular DNA, continuing the investigation initiated with linear splicing. In this paper we focu...
Paola Bonizzoni, Clelia de Felice, Gabriele Fici, ...
ICDM
2002
IEEE
173views Data Mining» more  ICDM 2002»
14 years 18 days ago
Mining Genes in DNA Using GeneScout
In this paper, we present a new system, called GeneScout, for predicting gene structures in vertebrate genomic DNA. The system contains specially designed hidden Markov models (HM...
Michael M. Yin, Jason Tsong-Li Wang
NIPS
2001
13 years 9 months ago
Thin Junction Trees
We present an algorithm that induces a class of models with thin junction trees--models that are characterized by an upper bound on the size of the maximal cliques of their triang...
Francis R. Bach, Michael I. Jordan