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BIOINFORMATICS
2007
53views more  BIOINFORMATICS 2007»
13 years 11 months ago
Wordom: a program for efficient analysis of molecular dynamics simulations
Michele Seeber, Marco Cecchini, Francesco Rao, Gio...
IBMRD
2008
52views more  IBMRD 2008»
13 years 11 months ago
Massively parallel molecular dynamics simulations of lysozyme unfolding
Ruhong Zhou, Maria Eleftheriou, Chung-Chau Hon, Ro...
ICPP
2006
IEEE
14 years 5 months ago
Salsa: Scalable Asynchronous Replica Exchange for Parallel Molecular Dynamics Applications
— This paper presents Salsa, a novel, decentralized and asynchronous realization of the “replica exchange” algorithm for simulating the structure, function, folding, and dyna...
Li Zhang, Manish Parashar, Emilio Gallicchio, Rona...
FPL
2008
Springer
180views Hardware» more  FPL 2008»
14 years 16 days ago
Compiled hardware acceleration of Molecular Dynamics code
The objective of Molecular Dynamics (MD) simulations is to determine the shape of a molecule in a given biomolecular environment. These simulations are very demanding computationa...
Jason R. Villarreal, Walid A. Najjar
IJES
2006
99views more  IJES 2006»
13 years 11 months ago
Dynamic reconfiguration for management of radiation-induced faults in FPGAs
This paper describes novel methods of exploiting the partial, dynamic reconfiguration capabilities of Xilinx Virtex V1000 FPGAs to manage single-event upset (SEU) faults due to rad...
Maya Gokhale, Paul Graham, Michael J. Wirthlin, Da...