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» Reconfigurable Molecular Dynamics Simulator
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IPPS
2007
IEEE
14 years 4 months ago
Analysis of a Computational Biology Simulation Technique on Emerging Processing Architectures
1 Multi-paradigm, multi-threaded and multi-core computing devices available today provide several orders of magnitude performance improvement over mainstream microprocessors. These...
Jeremy S. Meredith, Sadaf R. Alam, Jeffrey S. Vett...
SC
2005
ACM
14 years 3 months ago
SPICE: Simulated Pore Interactive Computing Environment
— SPICE aims to understand the vital process of translocation of biomolecules across protein pores by computing the free energy profile of the translocating biomolecule along th...
Shantenu Jha, Peter V. Coveney, Matt J. Harvey
HIPC
2003
Springer
14 years 3 months ago
Performance Analysis of Blue Gene/L Using Parallel Discrete Event Simulation
High performance computers currently under construction, such as IBM’s Blue Gene/L, consisting of large numbers (64K) of low cost processing elements with relatively small local...
Ed Upchurch, Paul L. Springer, Maciej Brodowicz, S...
CPHYSICS
2010
88views more  CPHYSICS 2010»
13 years 10 months ago
Distributed computing as a virtual supercomputer: Tools to run and manage large-scale BOINC simulations
Distributed computing (DC) projects tackle large computational problems by exploiting the donated processing power of thousands of volunteered computers, connected through the Int...
Toni Giorgino, Matt J. Harvey, Gianni De Fabritiis
CPHYSICS
2008
80views more  CPHYSICS 2008»
13 years 10 months ago
Cluster-forming systems of ultrasoft repulsive particles: statics and dynamics
In this paper, we present a short review as well as novel results on a recently established counterintuitive phenomenon of cluster aggregation of particles that interact via purel...
Christos N. Likos, Bianca M. Mladek, Angel J. More...