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» Reconfigurable Molecular Dynamics Simulator
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BMCBI
2010
259views more  BMCBI 2010»
13 years 4 months ago
Rule-based spatial modeling with diffusing, geometrically constrained molecules
Background: We suggest a new type of modeling approach for the coarse grained, particle-based spatial simulation of combinatorially complex chemical reaction systems. In our appro...
Gerd Gruenert, Bashar Ibrahim, Thorsten Lenser, Ma...
SCFBM
2008
92views more  SCFBM 2008»
13 years 9 months ago
CRANKITE: A fast polypeptide backbone conformation sampler
Background: CRANKITE is a suite of programs for simulating backbone conformations of polypeptides and proteins. The core of the suite is an efficient Metropolis Monte Carlo sample...
Alexei A. Podtelezhnikov, David L. Wild
MICCAI
2008
Springer
14 years 11 months ago
Spatial Weighed Element Based FEM Incorporating a Priori Information on Bioluminescence Tomography
Bioluminescence tomography (BLT) is a promising imaging technique which may dynamically and real-timely detect the molecular and cellular activity at the whole-body level in small ...
Jin Shi, Jie Tian, Min Xu, Wei Yang
CSB
2005
IEEE
140views Bioinformatics» more  CSB 2005»
14 years 3 months ago
TPR Packing Analysis and 3D Modeling for the HAT Domain of Human Crooked Neck Protein
Human crooked neck protein (hcrn) containing 17 HAT or TPR repeats plays a role in pre-mRNA processing. Conserved residues in the TPR consensus sequence of 34 aa were found at hel...
Zhenglin Hou, Cunxi Wang, Odd-Arne Olsen
IPPS
1997
IEEE
14 years 2 months ago
DPF: A Data Parallel Fortran Benchmark Suite
We present the Data Parallel Fortran (DPF) benchmark suite, a set of data parallel Fortran codes forevaluatingdata parallel compilers appropriatefor any target parallel architectu...
Y. Charlie Hu, S. Lennart Johnsson, Dimitris Kehag...